The story of the film revolves around Intelligence officer Jayamohan (Mohanlal) and his wife Anjali (Amala Paul). However, Anjali is unaware of the fact that he is an anti- terrorist intelligence agent as his job demands secrecy, but soon she will learn the truth behind Jayamohan. Certain turn of events lead Anjali to join the team of secret agents and together they try to solve the plots set up by the terrorist group

An ordinary young man, Ali, makes a living by riding an auto rickshaw in the night. One day, he meets a woman called Suhra and falls in love with her. He tries to woo her in various ways but something from his past crops up, haunting his present.

Mili is a motivational film about Mili, an introvert girl who is very depressed. But she finds it in herself to think of her nadir as but a stepping stone to success. She chooses to rise above the challenges and take back the reins of her life.