After a scientific experiment leads to the creation of Mewtwo, he sets out to destroy the world. Satoshi and his friends then decide to thwart Mewtwo’s evil plans.

Satoshi must put his skill to the test when he attempts to save the world from destruction. The Greedy Pokemon collector Gelardan throws the universe into chaos after disrupting the balance of nature by capturing one of the Pokemon birds that rule the elements of fire, lightning and ice. Will Satoshi have what it takes to save the world?

40 years ago, a Celebi was being attacked by a Pokemon Hunter. Luckily, a young boy named Sammy saved Celebi. Using its Time Traveling power, Celebi transported himself and Sammy 40 years into the future. There, Ash, Misty, and Brock assist Sammy to the healing lake in the forest so they can heal the wounded Celebi. Unfortunately an evil Team Rocket member, Viscious a.k.a. “The Iron Masked Marauder”, tries to capture Celebi using his technology. As Ash and Co. try to get away from Viscious, they also run into Jessie, James, and Meowth, who also want to capture Celebi. Soon it becomes a race against time to get Celebi and Sammy back to the forest before Celebi is caught and is used to destroy the forest and themselves.